publications

2025

1. RIBOSS detects novel translational events by combining long-and short-read transcriptome and translatome profiling

   Chun Shen Lim, Alexandra K Gibbon , Anh Thu Tran Nguyen , and 2 more authors

   Briefings in bioinformatics, 2025

2021

1. Quantitative analysis of the splice variants expressed by the major hepatitis B virus genotypes

   Chun Shen Lim, Vitina Sozzi , Margaret Littlejohn , and 5 more authors

   Microbial Genomics, 2021
2. Analysis of 11,430 recombinant protein production experiments reveals that protein yield is tunable by synonymous codon changes of translation initiation sites

   Bikash K Bhandari , Chun Shen Lim, Daniela M Remus , and 3 more authors

   PLOS Computational Biology, 2021
3. TISIGNER.com: web services for improving recombinant protein production

   Bikash K Bhandari , Chun Shen Lim, and Paul P Gardner

   Nucleic Acids Research, 2021
4. Analysis of fungal genomes reveals commonalities of intron gain or loss and functions in intron-poor species

   Chun Shen Lim, Brooke N Weinstein , Scott W Roy , and 1 more author

   Molecular Biology and Evolution, 2021

2020

1. Solubility-Weighted Index: fast and accurate prediction of protein solubility

   Bikash K Bhandari , Paul P Gardner , and Chun Shen Lim

   Bioinformatics, 2020
2. A crowdsourced set of curated structural variants for the human genome

   Lesley M Chapman , Noah Spies , Patrick Pai , and 8 more authors

   PLOS Computational Biology, 2020
3. Razor: annotation of signal peptides from toxins

   Bikash K Bhandari , Paul P Gardner , and Chun Shen Lim

   bioRxiv, 2020

2019

1. Genotypic and phenotypic variation of CADASIL among Chinese, Indians and Rungus in Malaysia

   Tsun Haw Toh , Kheng Seang Lim , Ching Ching Ng , and 8 more authors

   Neuroscience Research Notes, 2019
2. Systematic comparison of plasma EBV DNA, anti-EBV antibodies and miRNA levels for early detection and prognosis of nasopharyngeal carcinoma

   Lu Ping Tan , Geok Wee Tan , Vijaya Mohan Sivanesan , and 8 more authors

   International Journal of Cancer, 2019

2018

1. Know your enemy: Successful bioinformatic approaches to predict functional RNA structures in viral RNAs

   Chun Shen Lim, and CM Brown

   Frontiers in Microbiology, 2018
2. The exon–intron gene structure upstream of the initiation codon predicts translation efficiency

   Chun Shen Lim, Samuel J T Wardell , Torsten Kleffmann , and 1 more author

   Nucleic Acids Research, 2018

2017

1. A new class of ribozyme from hepatitis B virus.

   Chun Shen Lim, and Christopher Brown

   The FEBS Journal, 2017

2016

1. Hepatitis B virus nuclear export elements: RNA stem-loop αand β, key parts of the HBV post-transcriptional regulatory element

   Chun Shen Lim, and Chris M Brown

   RNA Biology, 2016

2015

1. Inclusion bodies of recombinant Epstein–Barr virus capsid antigen p18 as potential immobilized antigens in enzyme immunoassays for detection of nasopharyngeal carcinoma

   Chun Shen Lim, Siang Ling Goh , Leena Kariapper , and 3 more authors

   Clinica Chimica Acta, 2015
2. R54C mutation of NOTCH3 gene in the first Rungus family with CADASIL

   Kheng-Seang Lim , Ai-Huey Tan , Chun-Shen Lim , and 8 more authors

   PLOS ONE, 2015

2014

1. Recombinant production of Epstein-Barr virus BZLF1 trans-activator and characterization of its DNA-binding specificity

   Chun Shen Lim, Siang Ling Goh , Gopala Krishnan , and 1 more author

   Protein Expression and Purification, 2014

2013

1. On optimizing the blocking step of indirect enzyme-linked immunosorbent assay for Epstein-Barr virus serology

   Chun Shen Lim, Gopala Krishnan , Choon Kook Sam , and 1 more author

   Clinica Chimica Acta, 2013